OmicsQ offers flexible analysis of omics datasets.
Our services include:
● Standardized pipelines for raw data analysis
● Visualization tools for exploratory analysis
● Manuscript support
● Data interpretation
We have expertise in bioinformatics, experimental biomedical science, and clinical medicine.
Differential gene expression (simulation with randomly selected genes)
Features:
● Scatterplot with zoom/pan
● Toggle gene labels (automatic sparse-area labeling)
● Draggable polygon (remove and click to draw new polygon)
Many more functionalities are included in our interactive websites
Free initial consultation (video call)
Setting general expectations and goals
Data analysis
Includes static plots, written reports, and follow-up video
discussion
● CRISPR screens
Pooled and arrayed, quality control,
hit calling, pathway enrichment
● Bulk RNA-Seq
Differential expression, gene enrichment, pathway analysis
● Single-cell RNA-Seq
Clustering, dimensionality reduction, differential expression,
pseudotimeand trajectory analysis, integration of multiple samples
● Spatial transcriptomics (available soon)
Spot-level analysis, spatial clustering, gene expression overlays
● Image analysis
Customized pipelines for microscopy-based assays
(e.g. neurite tracing, histopathology, multiplexed
imaging)
Interactive data visualization tools (protected website)
● Scatter plots (single-cell RNA-Seq clusters, differential gene
expression)
● Rich interactive features (zoom and pan, hover info, selection
tools)
● Graphical manipulation of selected datasets for downstream
analysis
● Scatterplots accompanied by interactive tables (sort, filter,
backtrack)
● Integration of curated gene set collections (MSigDB)
Manuscript support
Production of publication-ready figures. Methods summary. Data
relevance for biomedical science and medicine. Future directions.
Data exploration (Q&A session, video call)
Report based on extensive exploration using proprietary interactive tools
Custom Projects
If the above categories don’t fit: flexible consulting for
customized projects